Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2972Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (65 aa)    
Predicted Functional Partners:
CV_2973
Probable ecf-family RNA polymerase sigma factor transcription regulator protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.935
radA
DNA repair protein radA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.773
CV_0585
Probable RNA polymerase sigma factor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.723
rpoE
RNA polymerase sigma-E factor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.723
CV_0737
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.715
CV_2526
Probable extracytoplasmic sigma factor EcfR; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.715
CV_2977
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2907.
  
  
 0.661
CV_2971
Hypothetical protein.
       0.588
CV_2975
Hypothetical protein.
       0.486
CV_2976
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG1028.
       0.471
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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