STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2986Hypothetical protein. (123 aa)    
Predicted Functional Partners:
fliA2
RNA polymerase sigma factor for flagellar operon; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1191; Belongs to the sigma-70 factor family.
    
  0.939
flgM
Negative regulator of flagellin synthesis; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2747.
     
  0.900
fliA1
RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
     
  0.900
CV_2645
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1366.
     
  0.900
CV_3444
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1366.
     
  0.900
CV_2985
Hypothetical protein.
  
  
 0.852
CV_2987
Probable transcription regulator, Crp/Fnr family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0664.
       0.773
CV_2984
Probable flagellar protein flgJ; Identified by sequence similarity; putative; ORF located using Blastx/COG1705.
       0.630
CV_2992
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3144.
       0.446
lafU
Chemotaxis lafU protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1360/TC:1.A.30.1.1.
       0.433
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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