STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caiBCarnitine dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1804; Belongs to the CoA-transferase III family. (464 aa)    
Predicted Functional Partners:
CV_3818
Probable electron transfer flavoprotein, beta subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2086.
    
 0.752
CV_0864
Probable haloacid dehalogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1011.
  
  
 0.652
CV_3014
Probable transmembrane transport protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477.
     
 0.580
CV_3012
Probable serine carboxypeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
       0.578
CV_1809
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2079.
 
    0.516
CV_0804
Probable taurine dioxygenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2175.
  
   
 0.480
CV_1804
Probable oxyreductase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0674.
 
   
 0.474
CV_0303
Probable indolepyruvate ferredoxin oxidoreductase, subunit alpha; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0674.
 
   
 0.468
fadB
3-hydroxyacyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1024.
  
 
 0.466
tauD
Taurine dioxygenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2175.
  
   
 0.417
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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