node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CV_3044 | cmk | CV_3044 | CV_3047 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. | Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283. | 0.441 |
CV_3044 | himD | CV_3044 | CV_3045 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.556 |
CV_3044 | rpsA | CV_3044 | CV_3046 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.556 |
CV_3869 | himD | CV_3869 | CV_3045 | Probable DNA-binding protein hu-beta; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0776; Belongs to the bacterial histone-like protein family. | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.776 |
CV_3869 | ihfA | CV_3869 | CV_1354 | Probable DNA-binding protein hu-beta; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0776; Belongs to the bacterial histone-like protein family. | Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.747 |
CV_3869 | pheA | CV_3869 | CV_2355 | Probable DNA-binding protein hu-beta; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0776; Belongs to the bacterial histone-like protein family. | Chorismate mutase/prephenate dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1605. | 0.438 |
CV_3869 | rpsO | CV_3869 | CV_1465 | Probable DNA-binding protein hu-beta; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0776; Belongs to the bacterial histone-like protein family. | 30s ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.512 |
CV_3869 | rpsT | CV_3869 | CV_3747 | Probable DNA-binding protein hu-beta; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0776; Belongs to the bacterial histone-like protein family. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.597 |
cas1-2 | himD | CV_1756 | CV_3045 | Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.665 |
cas1-2 | ihfA | CV_1756 | CV_1354 | Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. | Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.807 |
cmk | CV_3044 | CV_3047 | CV_3044 | Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283. | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. | 0.441 |
cmk | himD | CV_3047 | CV_3045 | Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283. | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.658 |
cmk | pheA | CV_3047 | CV_2355 | Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283. | Chorismate mutase/prephenate dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1605. | 0.633 |
cmk | rpsA | CV_3047 | CV_3046 | Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.968 |
himD | CV_3044 | CV_3045 | CV_3044 | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. | 0.556 |
himD | CV_3869 | CV_3045 | CV_3869 | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable DNA-binding protein hu-beta; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0776; Belongs to the bacterial histone-like protein family. | 0.776 |
himD | cas1-2 | CV_3045 | CV_1756 | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. | 0.665 |
himD | cmk | CV_3045 | CV_3047 | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283. | 0.658 |
himD | ihfA | CV_3045 | CV_1354 | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.998 |
himD | pheA | CV_3045 | CV_2355 | Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Chorismate mutase/prephenate dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1605. | 0.705 |