Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3063Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2836. (225 aa)    
Predicted Functional Partners:
CV_1174
Probable cytochrome-c oxidase, subunit I; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3278/TC:3.D.4.3.1; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.830
CV_1173
Probable cytochrome-c oxidase, subunit II; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2993.
 
     0.796
CV_1170
Probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0348.
 
   
 0.789
CV_1452
Probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0348.
 
     0.788
CV_1171
Probable cytochrome-c oxidase, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.787
fixS
Nitrogen fixation protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3197.
 
   
 0.720
CV_2042
Probable cation transport P-type ATPase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2217/TC:3.A.3.5.1.
 
   
 0.694
CV_1169
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3198.
 
   
 0.686
CV_1589
Probable integral membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3235.
  
     0.547
hemN
Oxygen-independent coproporphyrinogen III oxidase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0635; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
   
 0.477
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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