STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuBHigh-affinity zinc transport system permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1108/TC:3.A.1.15.2. (291 aa)    
Predicted Functional Partners:
znuA
High-affinity zinc transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0803; Belongs to the bacterial solute-binding protein 9 family.
  
 0.999
znuC
Zinc transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1121.
 
 0.999
zur
Transcriptional repressor of znuABC operon; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0735; Belongs to the Fur family.
 
  
 0.768
CV_3067
Probable cobalamin synthesis protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
  
 0.670
fur
Ferric uptake regulation protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0735; Belongs to the Fur family.
  
  
 0.562
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
   
  
 0.507
mntH
Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
   
  
 0.506
CV_3314
Probable membrane transport protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1914/TC:2.A.55.3.1.
   
  
 0.506
CV_3478
Probable manganese transport transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1914/TC:2.A.55.3.1.
   
  
 0.506
CV_3331
Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1137.
 
   
 0.504
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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