Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
zurTranscriptional repressor of znuABC operon; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0735; Belongs to the Fur family. (117 aa)    
Predicted Functional Partners:
znuC
Zinc transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1121.
 
  
 0.810
CV_3739
Probable peroxidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0450.
  
  
 0.788
znuB
High-affinity zinc transport system permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1108/TC:3.A.1.15.2.
 
  
 0.768
rpoA
DNA-directed RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.757
CV_3067
Probable cobalamin synthesis protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
  
 0.657
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.650
znuA
High-affinity zinc transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0803; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.614
rpoC
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.576
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 0.569
rubB
Rubredoxin; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1773.
  
  
 0.536
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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