Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3089Probable two-component system; Identified by sequence similarity; putative; ORF located using Blastx/COG0642. (414 aa)    
Predicted Functional Partners:
CV_3503
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
 
0.883
CV_2323
Probable transcriptional regulatory protein, LuxR family; Identified by sequence similarity; putative; ORF located using Blastx/COG2197.
 
 0.855
CV_1951
Probable two-component sensor; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
0.854
CV_2961
Probable transcriptional regulatory, LuxR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2197.
 
 0.853
CV_3248
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
 
0.851
CV_2643
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
 
 
0.847
CV_1189
Probable two-component system; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3437.
 
 
 0.842
CV_1621
Probable sensor/response regulatory hybrid protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
 
 0.838
CV_4379
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642.
   
 
 0.819
CV_1190
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
 
 
 0.807
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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