Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mgtAMg2+-importing ATPase; Identified by sequence similarity; putative; ORF located using Blastx/COG0474/TC:3.A.3.4.1. (914 aa)    
Predicted Functional Partners:
CV_3477
Probable Mg2+ transport ATPase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1285/TC:9.B.20.1.2.
 
 
 0.779
CV_3513
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3220; Belongs to the UPF0276 family.
   
    0.771
CV_3511
Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
   
    0.679
CV_3512
Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
   
    0.679
CV_1359
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2119/TC:9.B.26.1.1.
   
 
 0.669
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.662
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
   0.661
mgtC
Mg(2+) transport ATPase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1285/TC:9.B.20.1.1.
  
 
 0.642
rpsE
30s ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.639
chaA
Calcium/proton antiporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0387/TC:2.A.19.1.1.
  
 
 0.613
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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