Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fliR1Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (252 aa)    
Predicted Functional Partners:
flhB1
Flagellar biosynthetic protein flhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
 0.998
spaS
Secretory protein / flagellar biosynthetic protein flhB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1377/TC:3.A.6.1.1.
 
 0.997
fliQ1
Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
 
 0.997
fliP-2
Probable flagellar biosynthetic protein fliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
 
 0.997
flhB2
Flagellar biosynthetic protein flhB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1377/TC:3.A.6.1.2.
 
 0.996
fliP
Flagellar biosynthetic protein fliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
 
 0.989
fliM
Flagellar motor switch protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1868.
 
 
 0.989
fliN
Flagellar motor switch protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1886.
 
 
 0.983
CV_3128
Probable Flagellar protein FliO; Identified by sequence similarity; putative; ORF located using Blastx/TC:3.A.6.1.2.
 
  
 0.979
fliQ2
Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
 
 0.975
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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