Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3133Probable flagellar protein FliJ; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2882. (127 aa)    
Predicted Functional Partners:
CV_3132
Hypothetical protein.
 
  
 0.983
CV_3128
Probable Flagellar protein FliO; Identified by sequence similarity; putative; ORF located using Blastx/TC:3.A.6.1.2.
 
  
 0.980
fliI1
Flagellum-specific ATP synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157/TC:3.A.6.1.2.
  
 
 0.970
fliM
Flagellar motor switch protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1868.
 
  
 0.962
fliH
Flagellar assembly protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1317.
 
  
 0.961
fliL
Flagellar fliL transmembrane protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.952
flgJ
Flagellar protein flgJ; Identified by sequence similarity; putative; ORF located using Blastx/COG1705.
 
  
 0.950
CV_3872
Hypothetical protein.
 
  
 0.947
CV_2603
Probable type III secretion system ATP synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157/TC:3.A.6.1.1.
  
 
 0.929
invC
Surface presentation of antigens, secretory proteins; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157.
  
 
 0.929
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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