Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3141Hypothetical protein. (60 aa)    
Predicted Functional Partners:
CV_3140
Probable protein-tyrosine-phosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0394; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.664
CV_3139
Probable protein-glutamate methylesterase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2201.
       0.533
CV_3142
Hypothetical protein.
       0.511
fliE
Flagellar hook-basal body complex protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1677.
       0.486
CV_3138
Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2204.
       0.486
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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