Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3148Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2204. (775 aa)    
Predicted Functional Partners:
CV_3147
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3535.
 
     0.807
rpoN
RNA polymerase N (sigma54) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.805
hyuA
Hydantoin racemase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0796.
       0.773
CV_0841
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
  
 
 0.722
fleN
Flagellar synthesis regulator FleN; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0455.
  
 
 0.681
ntrB
Two-component sensor NtrB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642.
 
 
 0.595
flhF
Flagellar biosynthetic protein FlhF; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1419.
  
  
 0.530
fliM
Flagellar motor switch protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1868.
  
  
 0.529
CV_3089
Probable two-component system; Identified by sequence similarity; putative; ORF located using Blastx/COG0642.
 
 
 
 0.526
CV_1621
Probable sensor/response regulatory hybrid protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
 
 0.516
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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