Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pbpGD-alanyl-D-alanine-endopeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1686; Belongs to the peptidase S11 family. (289 aa)    
Predicted Functional Partners:
mtgA
Peptidoglycan glycosyltransferase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
  
 0.687
mrcA
Peptidoglycan glycosyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0744.
      
 0.626
ftsW
Cell division protein ftsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
 
  
 0.542
dsbA
Thiol:disulfide interchange protein dsbA precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0526.
  
    0.497
ftsI
Penicillin-binding protein 3 precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
 
  
 0.480
dacC
D-ala-D-ala-carboxypeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1686; Belongs to the peptidase S11 family.
  
   
0.450
recJ
Exodeoxyribonuclease VII; Identified by sequence similarity; putative; ORF located using Blastx/COG0608.
 
     0.424
rlpB
Rare lipoprotein B precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
 
    0.422
sltY
Peptidoglycan N-acetylmuramoylhydrolase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0741.
  
   
 0.415
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.409
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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