STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3166Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0056. (392 aa)    
Predicted Functional Partners:
CV_3165
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
     0.950
CV_0818
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0463.
   
    0.802
osmB
Osmotically inducible lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
   
    0.669
CV_1109
Probable ATP-sensitive inward rectifier potassium channel related transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1226.
  
     0.540
CV_3161
Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1130.
       0.507
CV_3162
Probable thiamine transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1178/TC:3.A.1.19.1.
       0.507
CV_3163
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1670.
       0.507
tbpA
Thiamin-binding periplasmic protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1840/TC:3.A.1.19.1.
       0.507
acpA
Acid phosphatase; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.501
CV_1102
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2764.
   
    0.487
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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