Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alkBAlkylated DNA repair protein, AlkB protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3145. (215 aa)    
Predicted Functional Partners:
alkA
DNA-3-methyladenine glycosidase II; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0122.
     
 0.855
pmbA
pmbA protein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.773
ADA
methylated-DNA-[protein]-cysteine S-methyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0350.
 
  
 0.629
CV_3585
Probable magnesium transporter; Acts as a magnesium transporter.
    
 0.550
CV_3198
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3028; Belongs to the UPF0307 family.
       0.537
mog
Molybdopterin biosynthesis Mog protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0521.
       0.537
CV_3200
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0429.
       0.537
CV_3194
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1752.
       0.440
hpd
4-hydroxyphenylpyruvate dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/COG3185.
   
    0.438
CV_3201
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2050.
       0.431
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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