STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osmBOsmotically inducible lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (73 aa)    
Predicted Functional Partners:
CV_0818
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0463.
   
  
 0.706
CV_3166
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0056.
   
    0.694
CV_1355
Probable transcriptional regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0789.
   
    0.688
ompH
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2825; Belongs to the skp family.
  
 
 0.648
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.586
flgC2
Flagellar basal-body rod protein flgC; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1558; Belongs to the flagella basal body rod proteins family.
   
   0.565
flgC1
Flagellar basal-body rod protein flgC; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1558; Belongs to the flagella basal body rod proteins family.
   
   0.565
CV_3208
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0204.
       0.545
dgt
dGTPase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0232.
  
    0.539
CV_2293
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3568.
  
  
 0.515
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.