Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CV_3223Probable transcription regulator, TetR Family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1309. (211 aa)    
Predicted Functional Partners:
CV_3225
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3496.
 
     0.700
CV_3228
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
     0.678
CV_3227
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1028.
 
   
 0.677
CV_3224
Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG2907.
 
     0.612
CFA
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG2230.
 
     0.536
CV_1601
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0730.
  
     0.460
pth
aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.444
CV_3158
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2207.
  
     0.408
paiA
Transcriptional repressor of sporulation, septation and degradative enzyme; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0454.
  
     0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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