Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3228Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (144 aa)    
Predicted Functional Partners:
CV_3227
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1028.
 
   
 0.959
CFA
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG2230.
 
     0.920
CV_3225
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3496.
 
   
 0.915
CV_3224
Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG2907.
 
   
 0.908
CV_3229
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3046.
 
   
 0.886
blc
Outer membrane lipoprotein, lipocalin; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
 
     0.822
CV_3223
Probable transcription regulator, TetR Family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1309.
 
     0.678
CV_3231
Hypothetical protein.
       0.400
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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