Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ocdOrnithine cyclodeaminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2423. (314 aa)    
Predicted Functional Partners:
tdcB
Threonine dehydratase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1171.
 
  
 0.875
CV_3251
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2964.
 
  
 0.690
CV_2826
Probable proline racemace; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Can also catalyze the epimerization of trans-3-hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp), albeit with 19-fold lower efficiency. Displays no proline racemase activity.
 
   
 0.648
thrC
Threonine synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG0498.
    
 0.512
hcnB
Hydrogen cyanide synthase HcnB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0446.
 
   
 0.497
putA
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.489
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.487
cysM
Cysteine synthase B; Identified by sequence similarity; putative; ORF located using Blastx/COG0031; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.421
cysK
Cysteine synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG0031; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.421
CV_3597
Probable cysteine synthase B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0031.
  
  
 0.421
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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