STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3255Probable secreted protease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (749 aa)    
Predicted Functional Partners:
lasB
Class 4 metalloprotease; Extracellular zinc metalloprotease.
  
  
 0.800
CV_0315
Probable peptidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0339.
  
    0.774
CV_1019
Probable TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.1.6.
  
     0.763
CV_0056
Probable aminopeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2234.
  
     0.732
CV_3506
Probable protease precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.731
CV_1699
Probable tonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.724
lipH
Lipase modulator protein; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.709
CV_4240
Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.703
CV_3316
Probable chitinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0178.
  
   
 0.690
CV_1970
Probable TonB-dependent receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.1.6.
  
     0.669
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.