Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3256Probable regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2207. (225 aa)    
Predicted Functional Partners:
CV_2654
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
   0.634
CV_2313
Probable transcriptional regulator, AraC family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
     0.626
CV_2826
Probable proline racemace; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Can also catalyze the epimerization of trans-3-hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp), albeit with 19-fold lower efficiency. Displays no proline racemase activity.
 
     0.596
rhaR
L-rhamnose operon transcriptional activator rhaR; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.593
CV_3255
Probable secreted protease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
     0.574
araC
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
     0.534
CV_0679
Probable transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
     0.507
argR
Transcriptional regulator (AraC-type DNA-binding domain-containing proteins); Identified by sequence similarity; putative; ORF located using Blastx/COG0693.
  
   0.445
CV_2584
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
     0.436
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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