Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
treCA,a-phosphotrehalase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0366. (549 aa)    
Predicted Functional Partners:
treB
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1264/TC:4.A.1.2.4.
 
 
 0.997
CV_3296
Probable amino-acid transporter transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0531/TC:2.A.3.3.1.
  
 0.814
CV_0871
Probable amino-acid permease transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0531/TC:2.A.3.6.1.
   
 0.767
CV_1186
Probable ethanolamin permease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0531/TC:2.A.3.5.1.
   
 0.767
CV_3432
Probable amino acid permease; Identified by sequence similarity; putative; ORF located using Blastx/COG0531/TC:2.A.3.2.2.
   
 0.767
arcD
Arginine/ornithine antiporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0531/TC:2.A.3.2.3.
   
 0.767
CV_2801
Hypothetical protein.
  
  
 0.762
ptsG
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.1.
 
  
 0.731
bglB
Beta-glucosidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2723; Belongs to the glycosyl hydrolase 1 family.
 
  
 0.699
nagE
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.2.
  
  
 0.695
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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