Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
treBprotein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1264/TC:4.A.1.2.4. (484 aa)    
Predicted Functional Partners:
treC
A,a-phosphotrehalase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0366.
 
 
 0.997
CV_0980
Probable phosphoenolpyruvate-protein phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1.
 
 
 0.983
CV_0558
Probable phosphoenolpyruvate-protein phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1.
 
 
 0.981
CV_1493
Probable b-N-acetylhexosaminidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3525.
  
  
 0.963
CV_2895
Probable transcriptional regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1940.
  
 
 0.950
ptsH
Sugar transport PTS system phosphocarrier protein HPR; Identified by sequence similarity; putative; ORF located using Blastx/COG1925.
  
 
 0.931
ptsA
Phosphoenolpyruvate-protein phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1.
  
  
 0.862
fruA
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1445/TC:4.A.2.1.1.
  
  
 0.844
treR
Transcriptional repressor of the trehalose operon; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
 
  
 0.841
fruB
Phosphotransferase system; Identified by sequence similarity; putative; ORF located using Blastx/COG1925.
  
  
 0.832
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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