Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3331Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1137. (242 aa)    
Predicted Functional Partners:
CV_3329
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3117.
  
 0.999
CV_2916
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0795.
 
 
 0.987
CV_2915
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0795.
   
 0.981
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
  
 0.980
CV_2457
Probable ABC superfamily, transport protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0842/TC:3.A.1.102.1.
   
  0.928
CV_3328
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1778.
 
  
 0.925
CV_3327
Probable KpsF/GutQ family protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0517; Belongs to the SIS family. GutQ/KpsF subfamily.
 
  
 0.924
livM
Leucine/isoleucine/valine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0559/TC:3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.912
CV_2458
Probable ABC transport system, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0842.
      0.906
cysW
Sulfate transport system permease protein CysW; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0555/TC:3.A.1.6.1.
 
      0.890
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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