STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3333Probable sigma-54 modulation protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1544. (110 aa)    
Predicted Functional Partners:
rpsU
30S ribosomal protein S21; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0828; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.960
rpsI
30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0103; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.957
rpmA
50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0211; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.956
rpmH
Ribosomal protein L34; Identified by sequence similarity; putative; ORF located using Blastx/COG0230; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.955
rpmC
50S ribosomal protein L29; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0255; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.953
rpsP
30S ribosomal protein S16; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.952
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.952
rpsE
30s ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.952
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
   0.951
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
    
 
 0.951
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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