Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3333Probable sigma-54 modulation protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1544. (110 aa)    
Predicted Functional Partners:
rpsI
30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0103; Belongs to the universal ribosomal protein uS9 family.
  
 0.951
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 0.947
rpsO
30s ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 0.935
rpsB
30S ribosomal protein S2; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0052; Belongs to the universal ribosomal protein uS2 family.
    
 0.933
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
  0.932
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
    
  0.932
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
  0.932
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
 0.927
rpmA
50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0211; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.893
rpsU
30S ribosomal protein S21; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0828; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.889
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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