Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3334Probable PTS system, fructose-specific IIABC componen; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1762. (153 aa)    
Predicted Functional Partners:
CV_0241
Probable pts system, nitrogen regulatory IIA component; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1762.
  
  
 
0.917
CV_3336
Conserved hypothetical protein; Displays ATPase and GTPase activities.
  
  
 0.907
fruA
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1445/TC:4.A.2.1.1.
 
  
 0.903
CV_3333
Probable sigma-54 modulation protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1544.
  
  
 0.881
fruK
1-phosphofructokinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1105; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.862
fruB
Phosphotransferase system; Identified by sequence similarity; putative; ORF located using Blastx/COG1925.
 
  
 0.851
ptsH
Sugar transport PTS system phosphocarrier protein HPR; Identified by sequence similarity; putative; ORF located using Blastx/COG1925.
 
  
 0.822
frwB
PTS system, fructose-like-2 IIB component 1; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1445/TC:4.A.2.1.1.
 
  
 0.813
frwC
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1299/TC:4.A.2.1.1.
 
  
 0.812
rpoN
RNA polymerase N (sigma54) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.812
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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