STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3397Probable stearoyl-CoA 9-desaturase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1398. (405 aa)    
Predicted Functional Partners:
CV_2093
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
  
     0.716
cysB2
Cystathionine beta-synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0517.
   
   0.582
coq7
Conserved hypothetical protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 
   0.566
CV_3788
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.562
ubiB
NAD(P)H-flavin reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0543/TC:3.D.5.1.1.
  
   
 0.544
CV_3398
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1241.
       0.532
CV_2476
Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.529
hrpA
ATP-dependent helicase hrpA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1643.
    
 
 0.506
CV_4069
Probable cytochrome c5; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3245.
  
     0.506
CV_2656
Probable cytochrome P450 hydroxylase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2124; Belongs to the cytochrome P450 family.
 
 
 0.496
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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