STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfrBacterioferritin; Iron-storage protein. (158 aa)    
Predicted Functional Partners:
CV_3552
Probable bacterioferritin; Identified by sequence similarity; putative; ORF located using Blastx/COG2193; Belongs to the bacterioferritin family.
 
 
 
0.925
hemH
Ferrochelatase, protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.917
CV_1964
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0748.
     
  0.900
CV_2071
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1988.
      
 0.645
CV_2461
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1988.
      
 0.645
CV_3400
Hypothetical protein.
       0.556
dps
DNA-binding stress protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0783; Belongs to the Dps family.
   
  
 0.530
rsbT
sigma-B regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0642.
   
  
 0.509
katE
Catalase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0753; Belongs to the catalase family.
  
  
 0.499
nudJ
Probable MutT-like protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0494; Belongs to the Nudix hydrolase family. NudJ subfamily.
       0.496
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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