Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gltPProton/sodium-glutamate symport protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1301/TC:2.A.23.3.3; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (393 aa)    
Predicted Functional Partners:
sdhD
Succinate dehydrogenase, hydrophobic subunit; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2142.
   
  
 0.699
CV_1198
Probable proton/sodium-glutamate symport protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1301/TC:2.A.23.1.2; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
     0.509
pabB
Anthranilate synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0147.
     
 0.501
pabC
4-amino-4-deoxychorismate lyase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0115.
       0.473
maeB
NADP-dependent malate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0281.
  
  
 0.449
CV_0558
Probable phosphoenolpyruvate-protein phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1.
     
 0.418
CV_0980
Probable phosphoenolpyruvate-protein phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1.
     
 0.418
CV_0456
Probable transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG2056/TC:2.A.35.1.1.
  
   
 0.410
lpdA1
Dihydrolipoamide dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1249.
  
 
 0.408
fumA
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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