Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3426Probable binding protein component of ABC dipeptide transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.5. (526 aa)    
Predicted Functional Partners:
dppB
Dipeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0601/TC:3.A.1.5.5.
 0.982
dppC
Dipeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.5.
 0.982
dppF
Dipeptide transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1124; Belongs to the ABC transporter superfamily.
 
 0.971
dppD
Probable ATP-binding component of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0444; Belongs to the ABC transporter superfamily.
 
 0.967
CV_3936
Probable binding protein component of ABC dipeptide transporter; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0747/TC:3.A.1.5.5.
  
  
 
0.908
CV_1097
Probable binding protein component of ABC dipeptide transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.5.
  
  
 
0.905
oppB
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.1.
 
 0.773
oppC
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.1.
 
 0.750
CV_1979
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.3.
 
 
 0.717
CV_2687
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.2.
 
 
 0.716
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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