Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3432Probable amino acid permease; Identified by sequence similarity; putative; ORF located using Blastx/COG0531/TC:2.A.3.2.2. (443 aa)    
Predicted Functional Partners:
treC
A,a-phosphotrehalase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0366.
   
 0.767
arcA
Arginine deiminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2235.
 
  
 0.704
usg
Aspartate-semialdehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0136; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
   0.651
arcC
Carbamate kinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0549; Belongs to the carbamate kinase family.
 
  
 0.562
NifR3
Regulatory gene required to sense and relay the nitrogen status; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
 
    0.442
gluQ
Probable glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
     
 0.419
lysP
Lysine-specific permease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0833/TC:2.A.3.1.2.
  
   
 0.413
gltB
Glutamate synthase, large subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0069.
  
  
 0.408
proY
Proline-specific permease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1113/TC:2.A.3.1.6.
 
   
 0.400
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.