STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheY4Chemotaxis protein cheY; Identified by sequence similarity; putative; ORF located using Blastx/COG0784. (121 aa)    
Predicted Functional Partners:
cheA
Chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
 0.966
CV_3450
Probable chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
 
 0.949
cheW2
Purine-binding chemotaxis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0835.
 
 
 0.946
CV_3438
Probable methyl-accepting chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2202.
 
  0.930
cheZ
Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
  
 
 0.914
CV_2643
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
 
 
 0.907
CV_3002
Probable flagellar motor switch protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1886.
   
 0.906
fliN
Flagellar motor switch protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1886.
   
 0.906
cheA2
Chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
 0.894
CV_1621
Probable sensor/response regulatory hybrid protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
 
 0.893
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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