STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3454Probable DNA-directed DNA polymerase, bacteriophage-type; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1573. (280 aa)    
Predicted Functional Partners:
CV_3452
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1214.
  
    0.908
rimI
Ribosomal-protein-alanine N-acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.834
CV_3353
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0739/TC:2.C.1.2.1.
   
   0.702
ssb
Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.695
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
      0.695
def
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
   
 0.687
CV_3451
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.678
CV_3450
Probable chemotaxis protein CheA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0643.
       0.640
cheZ
Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
       0.531
prc
Carboxy-terminal processing protease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0793; Belongs to the peptidase S41A family.
  
    0.498
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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