STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nemA1Flavoprotein NADH-dependent oxidoreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1902. (364 aa)    
Predicted Functional Partners:
nemA2
Flavoprotein NADH-dependent oxidoreductase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1902.
  
  
 
0.905
nfnB
Oxygen-insensitive NAD(P)H nitroreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0778.
  
 
 0.903
vioD
vioD - hydroxylase; Catalyzes the oxygenation of the 6-position of protodeoxyviolaceinate to form proviolacein.
 
    
 0.901
nfsA
Oxygen-insensitive NADPH nitroreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0778; Belongs to the flavin oxidoreductase frp family.
  
  
 0.685
CV_3818
Probable electron transfer flavoprotein, beta subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2086.
  
 
 0.645
frdA
Fumarate reductase flavoprotein subunit; Identified by sequence similarity; putative; ORF located using Blastx/COG1053.
    
 0.554
CV_3499
Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1309.
  
    0.518
CV_0181
Probable response regulator; Identified by sequence similarity; putative; ORF located using Blastx.
     
 0.494
CV_3817
Probable electron transfer flavoprotein alpha subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2025.
   
 
 0.453
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
  
 0.449
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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