STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3512Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (85 aa)    
Predicted Functional Partners:
CV_3513
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3220; Belongs to the UPF0276 family.
 
  
 0.985
CV_3514
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
  
 0.968
CV_3515
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3229.
 
  
 0.947
CV_0837
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.1.1.
   
    0.701
CV_2717
Probable extracellular serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG1404; Belongs to the peptidase S8 family.
   
    0.701
CV_0596
Hypothetical protein.
   
    0.679
CV_0597
Hypothetical protein.
   
    0.679
CV_2596
Probable type-III secretion protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/TC:3.A.6.1.1.
   
    0.679
mgtA
Mg2+-importing ATPase; Identified by sequence similarity; putative; ORF located using Blastx/COG0474/TC:3.A.3.4.1.
   
    0.679
spaO
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1886.
   
    0.562
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.