Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3515Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3229. (145 aa)    
Predicted Functional Partners:
CV_3513
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3220; Belongs to the UPF0276 family.
  
 0.992
CV_3514
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
 0.991
CV_3512
Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
  
 0.947
CV_3511
Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
  
 0.933
CV_0085
Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
  
 0.707
gidA
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.592
CV_2717
Probable extracellular serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG1404; Belongs to the peptidase S8 family.
   
 
 0.563
CV_0837
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.1.1.
   
    0.523
mgtA
Mg2+-importing ATPase; Identified by sequence similarity; putative; ORF located using Blastx/COG0474/TC:3.A.3.4.1.
   
  0.521
CV_1131
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0697.
   
  0.499
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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