Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3527Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0346. (117 aa)    
Predicted Functional Partners:
CV_3526
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1858.
       0.590
CV_1319
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2764.
 
  
 0.560
CV_2842
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
     0.541
CV_0533
Probable outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0729.
   
    0.456
CV_4139
Probable acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1960.
  
     0.447
acpA
Acid phosphatase; Identified by sequence similarity; putative; ORF located using Blastx.
       0.420
aidB
acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960.
  
     0.408
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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