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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmpMOuter membrane protein A precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG2885/TC:1.B.6.1.1. (226 aa)    
Predicted Functional Partners:
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.811
ompH
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2825; Belongs to the skp family.
  
 
 0.708
flgJ
Flagellar protein flgJ; Identified by sequence similarity; putative; ORF located using Blastx/COG1705.
     
 0.692
wzx
O-antigen translocase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2244/TC:2.A.66.2.2.
      
 0.682
lolA
Outer membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
 
 0.616
CV_3104
Probable porin signal peptide protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3203.
  
 
 0.587
cpoB
Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.576
mltD
Peptidoglycan N-acetylmuramoylhydrolase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0741.
 
 
 
 0.569
ompC
Porin signal peptide protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3203.
  
 
 0.567
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.544
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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