Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
cysB1Transcriptional regulator CysB; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
gcvA-2
Transcription regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.568
CV_3257
Probable transcriptional regulator LysR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.562
CV_0699
Probable transcriptional regulator LysR family; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
   
 0.557
cysH
Phosphoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite.
     
 0.548
gcvA
Glycine cleavage activator protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.524
CV_0298
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.514
CV_2471
Probable transcriptional regulator, LysR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.509
CV_1116
Probable transcriptional regulator LysR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
   
 0.504
omlA
Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.503
CV_1391
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
  
     0.493
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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