Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CV_3598Probable coenzyme F390 synthetase; Identified by sequence similarity; putative; ORF located using Blastx/COG0318. (435 aa)    
Predicted Functional Partners:
CV_2659
Probable phenylacetic acid degradation protein paaA; Identified by sequence similarity; putative; ORF located using Blastx/COG3396.
 
 
 0.973
CV_3597
Probable cysteine synthase B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0031.
       0.768
CV_4320
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1541.
  
     0.719
CV_1780
Probable long chain fatty-acid CoA ligase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0318/TC:9.B.17.1.4.
 
   
 0.652
CV_3599
Hypothetical protein.
       0.645
mhpT
3-hydroxyphenylpropionic acid transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0477/TC:2.A.1.15.1.
       0.645
CV_3596
Hypothetical protein.
       0.629
CV_2449
Probable coenzyme F390 synthetase; Identified by sequence similarity; putative; ORF located using Blastx/COG1541.
  
     0.604
CV_3601
Hypothetical protein.
       0.433
CV_1804
Probable oxyreductase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0674.
 
  
 0.417
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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