STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3642Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1937. (107 aa)    
Predicted Functional Partners:
adhC
Alcohol dehydrogenase class III; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1062; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
  
 0.851
CV_0739
Probable esterase; Serine hydrolase involved in the detoxification of formaldehyde.
  
  
 0.739
CV_3643
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2132/TC:9.A.10.1.1.
     
 0.709
fliA1
RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
    
   0.625
fliA2
RNA polymerase sigma factor for flagellar operon; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1191; Belongs to the sigma-70 factor family.
    
   0.625
CV_3641
Hypothetical protein.
       0.608
CV_1266
Probable copper ion binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2608.
  
  
 0.553
copA
Copper-transporting ATPase copA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2217/TC:3.A.3.5.1.
 
  
 0.438
suhB
Myo-inositol-1(or 4)-monophosphatase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0483; Belongs to the inositol monophosphatase superfamily.
       0.410
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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