STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3705Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0116; Belongs to the methyltransferase superfamily. (397 aa)    
Predicted Functional Partners:
CV_1104
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1092; Belongs to the methyltransferase superfamily.
  
 0.958
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
    0.818
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.805
birA
Biotin acetyl-CoA-carboxylase synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.688
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
    0.685
rimP
Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
    0.567
argS
arginyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0018.
  
    0.554
xthA
Exodeoxyribonuclease III; Identified by sequence similarity; putative; ORF located using Blastx/COG0708.
  
    0.531
exoA
Exodeoxyribonuclease III; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0708.
  
    0.531
CV_3704
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0609.
       0.530
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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