Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CV_3706Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2095/TC:9.B.10.1.2. (200 aa)    
Predicted Functional Partners:
CV_2729
Probable multiple antibiotic resistance protein MarC; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2095/TC:9.B.10.1.1.
  
   
 0.787
aefA
Transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0668/TC:1.A.23.1.1.
 
    0.522
dctA
C4-dicarboxylic acids transport protein (Na+/H+ dicarboxylate symporter); Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.483
CV_3705
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0116; Belongs to the methyltransferase superfamily.
       0.463
CV_4288
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0668/TC:1.A.23.2.1.
  
    0.445
CV_2330
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0668/TC:1.A.23.4.2.
  
    0.442
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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