Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3732Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (173 aa)    
Predicted Functional Partners:
CV_3733
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0577.
       0.657
CV_3734
Probable ATP-binding component, ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136.
       0.657
CV_1293
Probable hydrolase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0596.
  
     0.644
CV_0920
Probable two-component transmembrane sensor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0642.
  
     0.608
CV_0605
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.567
CV_2075
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1058.
  
     0.539
CV_0626
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3308.
  
     0.517
tesA
acyl-CoA thioesterase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2755.
       0.491
CV_4278
Probable ribokinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0524.
  
     0.443
CV_3617
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0810/TC:3.D.3.1.1.
  
     0.434
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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