STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3734Probable ATP-binding component, ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136. (232 aa)    
Predicted Functional Partners:
CV_4396
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0577.
 
 0.991
CV_3733
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0577.
 
  
 0.948
lolC
Lipoprotein releasing system trasmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0577/TC:3.A.1.125.1.
 
 
 0.898
CV_3942
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0577/TC:3.A.1.125.1.
  
 
 0.895
lolA
Outer membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.866
tesA
acyl-CoA thioesterase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2755.
 
     0.850
CV_4052
Probable amino acid ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.10.
 
    
 0.848
macB
Probable ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
0.833
CV_2982
Probable amino-acid transport system permease ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.10.
 
    
 0.794
CV_2458
Probable ABC transport system, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0842.
    
 0.790
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.