Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dtpAProbable peptide transporter protein; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily. (495 aa)    
Predicted Functional Partners:
gst2
Glutathione S-transferase family protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0625.
 
      0.538
bcsB
Cellulose synthase, subunit B; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
    0.434
nupC
Nucleoside permease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1972/TC:2.A.41.1.1.
  
  
 0.414
lysP
Lysine-specific permease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0833/TC:2.A.3.1.2.
  
     0.405
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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