STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcCCarbamate kinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0549; Belongs to the carbamate kinase family. (314 aa)    
Predicted Functional Partners:
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 
 0.998
arcA
Arginine deiminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2235.
 
  
 0.994
argI
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 
 0.991
CV_1448
Probable glutamine synthetase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0174; Belongs to the glutamine synthetase family.
     
 0.910
CV_2024
Probable glutamine synthetase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0174; Belongs to the glutamine synthetase family.
     
 0.910
glnA
Glutamine synthetase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0174.
     
 0.910
CV_4298
Probable glutamine synthetase; Identified by sequence similarity; putative; ORF located using Blastx/COG0174; Belongs to the glutamine synthetase family.
     
 0.910
cynS
Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
     
  0.900
gdhA
Glutamate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2902.
     
  0.900
glsA
Probable glutaminase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2066; Belongs to the glutaminase family.
     
  0.900
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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