STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3806Probable general secretion pathway protein L; Identified by sequence similarity; putative; ORF located using Blastx/COG3297. (389 aa)    
Predicted Functional Partners:
CV_3813
Probable type II secretion system protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.951
pilB
Type 4 fimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2804/TC:3.A.15.1.1.
  
 
 0.904
gspH
General secretory pathway protein H; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165.
  
  
 0.855
gspK
General secretory pathway protein K; Identified by sequence similarity; putative; ORF located using Blastx/COG3156/TC:3.A.15.1.1.
  
  
 0.854
gspI
General secretion pathway protein I; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165/TC:3.A.15.1.1.
  
  
 0.852
CV_3808
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2165.
     
 0.850
hofG
General secretion pathway protein G; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165/TC:3.A.15.1.1.
  
  
 0.822
hofF
General secretion pathway protein F; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1.
  
  
 0.673
CV_3814
Probable type II secretion system protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1450/TC:1.B.22.1.2.
  
  
 0.654
CV_3815
Hypothetical protein.
       0.515
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.