Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3813Probable type II secretion system protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (486 aa)    
Predicted Functional Partners:
hofF
General secretion pathway protein F; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1.
 
 
 0.994
hofG
General secretion pathway protein G; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165/TC:3.A.15.1.1.
 
 
 0.980
pilC
Fimbrial assembly transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1.
 
 0.975
CV_3814
Probable type II secretion system protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1450/TC:1.B.22.1.2.
  
 0.952
gspI
General secretion pathway protein I; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165/TC:3.A.15.1.1.
 
 
 0.949
CV_3806
Probable general secretion pathway protein L; Identified by sequence similarity; putative; ORF located using Blastx/COG3297.
  
 
 0.934
gspH
General secretory pathway protein H; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165.
 
 
 0.923
CV_3826
Probable type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.904
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by sequence similarity; putative; ORF located using Blastx.
  
 
 0.797
gspK
General secretory pathway protein K; Identified by sequence similarity; putative; ORF located using Blastx/COG3156/TC:3.A.15.1.1.
 
  
 0.796
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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